SMTL ID : 4k7c.1 (1 other biounit)

Crystal structure of pepw from lactobacillus rhamnosis hn001 (dr20) determined as the selenomet derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-hexamer

Ligands

48 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: N.32 Chain F: A.37, E.40, K.45 Ligands: GOL.40 Ligand excluded by PLIP GOL.2: 9 residues within 4Å: Chain A: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.3: 8 residues within 4Å: Chain A: N.41, T.42, D.43 Chain C: N.221 Chain F: N.24, Q.27, K.28, M.31 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.6: 7 residues within 4Å: Chain A: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.7: 4 residues within 4Å: Chain A: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: E.162, T.163, Y.164, S.167 Chain E: M.31 Ligands: GOL.33 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain B: N.32 Chain E: A.37, E.40, K.45 Ligands: GOL.32 Ligand excluded by PLIP GOL.10: 9 residues within 4Å: Chain B: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: N.221 Chain B: N.41, T.42, D.43 Chain E: N.24, Q.27, K.28, M.31 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain B: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain B: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.14: 7 residues within 4Å: Chain B: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.15: 4 residues within 4Å: Chain B: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain B: E.162, T.163, Y.164, S.167 Chain D: M.31 Ligands: GOL.25 Ligand excluded by PLIP GOL.17: 5 residues within 4Å: Chain C: N.32 Chain D: A.37, E.40, K.45 Ligands: GOL.48 Ligand excluded by PLIP GOL.18: 9 residues within 4Å: Chain C: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.19: 8 residues within 4Å: Chain B: N.221 Chain C: N.41, T.42, D.43 Chain D: N.24, Q.27, K.28, M.31 Ligand excluded by PLIP GOL.20: 6 residues within 4Å: Chain C: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain C: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.22: 7 residues within 4Å: Chain C: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.23: 4 residues within 4Å: Chain C: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain C: E.162, T.163, Y.164, S.167 Chain F: M.31 Ligands: GOL.41 Ligand excluded by PLIP GOL.25: 5 residues within 4Å: Chain C: A.37, E.40, K.45 Chain D: N.32 Ligands: GOL.16 Ligand excluded by PLIP GOL.26: 9 residues within 4Å: Chain D: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.27: 8 residues within 4Å: Chain C: N.24, Q.27, K.28, M.31 Chain D: N.41, T.42, D.43 Chain F: N.221 Ligand excluded by PLIP GOL.28: 6 residues within 4Å: Chain D: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.29: 5 residues within 4Å: Chain D: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.30: 7 residues within 4Å: Chain D: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.31: 4 residues within 4Å: Chain D: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.32: 6 residues within 4Å: Chain B: M.31 Chain D: E.162, T.163, Y.164, S.167 Ligands: GOL.9 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain B: A.37, E.40, K.45 Chain E: N.32 Ligands: GOL.8 Ligand excluded by PLIP GOL.34: 9 residues within 4Å: Chain E: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.35: 8 residues within 4Å: Chain B: N.24, Q.27, K.28, M.31 Chain D: N.221 Chain E: N.41, T.42, D.43 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain E: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.37: 5 residues within 4Å: Chain E: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.38: 7 residues within 4Å: Chain E: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.39: 4 residues within 4Å: Chain E: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.40: 6 residues within 4Å: Chain A: M.31 Chain E: E.162, T.163, Y.164, S.167 Ligands: GOL.1 Ligand excluded by PLIP GOL.41: 5 residues within 4Å: Chain A: A.37, E.40, K.45 Chain F: N.32 Ligands: GOL.24 Ligand excluded by PLIP GOL.42: 9 residues within 4Å: Chain F: T.78, W.142, W.255, Y.260, Q.308, S.314, V.315, W.316, V.412 Ligand excluded by PLIP GOL.43: 8 residues within 4Å: Chain A: N.24, Q.27, K.28, M.31 Chain E: N.221 Chain F: N.41, T.42, D.43 Ligand excluded by PLIP GOL.44: 6 residues within 4Å: Chain F: I.89, F.92, P.156, S.158, F.228, E.229 Ligand excluded by PLIP GOL.45: 5 residues within 4Å: Chain F: A.60, V.61, R.80, D.91, E.93 Ligand excluded by PLIP GOL.46: 7 residues within 4Å: Chain F: Y.98, W.102, Y.152, P.222, P.223, T.224, P.245 Ligand excluded by PLIP GOL.47: 4 residues within 4Å: Chain F: T.350, A.352, E.353, D.356 Ligand excluded by PLIP GOL.48: 6 residues within 4Å: Chain C: M.31 Chain F: E.162, T.163, Y.164, S.167 Ligands: GOL.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Webby, C. et al., Crystal structure of pepw from lactobacillus rhamnosis hn001 (dr20) determined as the selenomet derivative. TO BE PUBLISHED

Release Date

2013-06-19

Peptides

Aminopeptidase C: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Aminopeptidase C

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