SMTL ID : 4k7g.1

Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 11 residues within 4Å: Chain A: L.173, A.174, T.186, V.187, D.188, I.198, V.199, D.200, T.250, V.288, R.292 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.174, A:D.188, A:V.199, A:T.250, A:R.292 Water bridges: A:T.186, A:D.200, A:D.200 Salt bridges: A:R.292 CIT.3: 10 residues within 4Å: Chain B: A.174, T.186, V.187, D.188, I.198, V.199, D.200, T.250, V.288, R.292 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:A.174, B:D.188, B:V.199, B:T.250, B:R.292 Water bridges: B:T.186, B:D.200, B:D.200 Salt bridges: B:R.292

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 12 residues within 4Å: Chain A: D.107, P.109, P.110, Y.191, D.194, S.195, F.233, D.240, W.241, N.242, H.243, S.245 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.241 Hydrogen bonds: A:D.240, A:N.242, A:S.245 Salt bridges: A:H.243

2 x PYC: PYRROLE-2-CARBOXYLATE(Non-covalent)

PYC.4: 15 residues within 4Å: Chain A: E.39, H.84, E.104, S.112, G.113, S.114, F.246, I.268, D.274, S.276, T.278, G.279, T.280, G.281, F.311 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.246, A:T.278 Hydrogen bonds: A:G.113, A:S.114, A:S.114, A:D.274, A:G.279, A:T.280, A:T.280, A:T.280 PYC.5: 14 residues within 4Å: Chain B: E.39, H.84, E.104, S.112, G.113, S.114, F.246, I.268, D.274, T.278, G.279, T.280, G.281, F.311 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.246, B:I.268, B:T.278 Hydrogen bonds: B:G.113, B:S.114, B:S.114, B:S.276, B:G.279, B:T.280, B:T.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of a 3-hydroxyproline dehydratse from agrobacterium vitis, target efi-506470, with bound pyrrole 2-carboxylate, ordered active site. To be Published

Release Date

2013-05-01

Peptides

3-hydroxyproline dehydratse: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

3-hydroxyproline dehydratse