SMTL ID : 4k8w.1

An arm-swapped dimer of the S. pyogenes pilin specific assembly factor SipA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: N.27, R.42, A.44, E.69 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 EDO.2: 8 residues within 4Å: Chain A: N.27, D.28, V.29, K.119, I.120 Chain B: G.14, V.15, L.16 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.28, A:V.29, A:K.119, A:I.120, B:G.14, B:V.15 Water bridges: A:N.27, A:D.28 EDO.6: 4 residues within 4Å: Chain B: N.27, R.42, A.44, E.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.27, B:E.69 EDO.7: 8 residues within 4Å: Chain A: G.14, V.15, L.16 Chain B: N.27, D.28, V.29, K.119, I.120 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:V.29, B:K.119, B:I.120, A:G.14, A:V.15 Water bridges: B:N.27, B:D.28

6 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 4 residues within 4Å: Chain A: E.33, N.36, L.38 Chain B: Y.98 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.38 Hydrogen bonds: A:N.36, A:N.36 EOH.4: 6 residues within 4Å: Chain A: G.57, G.58, E.69, V.70, Y.72, L.73 No protein-ligand interaction detected (PLIP) EOH.5: 4 residues within 4Å: Chain A: V.34, K.39, L.103, Y.108 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.34, A:K.39, A:L.103, A:Y.108 Water bridges: A:E.101, B:T.37 EOH.8: 4 residues within 4Å: Chain A: Y.98 Chain B: E.33, N.36, L.38 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.38 Hydrogen bonds: B:N.36, B:N.36 EOH.9: 6 residues within 4Å: Chain B: G.57, G.58, E.69, V.70, Y.72, L.73 No protein-ligand interaction detected (PLIP) EOH.10: 4 residues within 4Å: Chain B: V.34, K.39, L.103, Y.108 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.34, B:K.39, B:L.103, B:Y.108 Water bridges: B:E.101, A:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, P.G. et al., An arm-swapped dimer of the Streptococcus pyogenes pilin specific assembly factor SipA. J.Struct.Biol. (2013)

Release Date

2013-06-26

Peptides

LepA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LepA