SMTL ID : 4k8z.1

KOD Polymerase in binary complex with dsDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)

NCO.1: 6 residues within 4Å: Chain A: N.568, L.571, P.572, G.573, L.575, E.576 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.568, A:N.568, A:G.573, A:L.575, A:E.576

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: G.167, A.168, Y.180, M.313, K.317 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.168 EDO.3: 4 residues within 4Å: Chain A: Y.209, N.210, Y.273, T.274 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.210

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 2 residues within 4Å: Chain B: G.7, C.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergen, K. et al., Structures of KOD and 9N DNA Polymerases Complexed with Primer Template Duplex. Chembiochem (2013)

Release Date

2013-06-26

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase

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