- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.427, N.454, T.456
- Ligands: TPP.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.427, A:T.456, H2O.2
CA.7: 4 residues within 4Å:- Chain B: D.427, N.454, T.456
- Ligands: TPP.6
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.427, B:T.456, H2O.26
CA.12: 4 residues within 4Å:- Chain C: D.427, N.454, T.456
- Ligands: TPP.11
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.427, C:T.456, H2O.50
CA.17: 4 residues within 4Å:- Chain D: D.427, N.454, T.456
- Ligands: TPP.16
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.427, D:T.456, H2O.74
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 7 residues within 4Å:- Chain A: N.116, L.117, R.119
- Chain B: N.116, L.117, R.119
- Ligands: MG.8
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:N.116, B:L.117, B:R.119, A:N.116, A:L.117, A:R.119
MG.4: 3 residues within 4Å:- Chain A: N.185, D.186
- Chain C: R.183
No protein-ligand interaction detected (PLIP)MG.5: 1 residues within 4Å:- Chain A: A.415
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:A.415, H2O.5, H2O.7, H2O.12, H2O.13
MG.8: 7 residues within 4Å:- Chain A: N.116, L.117, R.119
- Chain B: N.116, L.117, R.119
- Ligands: MG.3
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Metal complexes: B:N.116, B:L.117, B:R.119, A:N.116, A:L.117, A:R.119
MG.9: 3 residues within 4Å:- Chain B: N.185, D.186
- Chain D: R.183
No protein-ligand interaction detected (PLIP)MG.10: 1 residues within 4Å:- Chain B: A.415
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:A.415, H2O.29, H2O.31, H2O.36, H2O.37
MG.13: 7 residues within 4Å:- Chain C: N.116, L.117, R.119
- Chain D: N.116, L.117, R.119
- Ligands: MG.18
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Metal complexes: C:N.116, C:L.117, C:R.119, D:N.116, D:L.117, D:R.119
MG.14: 3 residues within 4Å:- Chain A: R.183
- Chain C: N.185, D.186
No protein-ligand interaction detected (PLIP)MG.15: 1 residues within 4Å:- Chain C: A.415
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:A.415, H2O.53, H2O.55, H2O.59, H2O.61
MG.18: 7 residues within 4Å:- Chain C: N.116, L.117, R.119
- Chain D: N.116, L.117, R.119
- Ligands: MG.13
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Metal complexes: C:N.116, C:L.117, C:R.119, D:N.116, D:L.117, D:R.119
MG.19: 3 residues within 4Å:- Chain B: R.183
- Chain D: N.185, D.186
No protein-ligand interaction detected (PLIP)MG.20: 1 residues within 4Å:- Chain D: A.415
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:A.415, H2O.77, H2O.79, H2O.83, H2O.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Tyr mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the His281Tyr mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A