- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
TZD.3: 25 residues within 4Å:- Chain A: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Chain C: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: MG.1
18 PLIP interactions:17 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.402, A:Y.432, A:Y.457, A:L.460
- Hydrogen bonds: A:T.376, A:S.377, A:G.400, A:L.402, A:G.426, A:G.428, A:S.429, A:Y.432, A:N.454, A:G.458, A:I.459
- Water bridges: A:D.427, A:N.454, C:E.46
TZD.6: 25 residues within 4Å:- Chain B: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Chain D: N.22, P.23, G.24, E.46, H.69, N.76
- Ligands: MG.4
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:L.402, B:Y.432, B:Y.457, B:L.460
- Hydrogen bonds: B:T.376, B:T.376, B:S.377, B:G.400, B:L.402, B:G.428, B:S.429, B:S.429, B:N.454, B:G.458, B:I.459
- Water bridges: B:D.427, B:N.454
TZD.8: 25 residues within 4Å:- Chain A: N.22, P.23, G.24, E.46, H.69, N.76
- Chain C: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Ligands: MG.7
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:Y.432, C:I.459, C:L.460
- Hydrogen bonds: C:S.375, C:T.376, C:S.377, C:G.400, C:L.402, C:G.426, C:G.428, C:S.429, C:Y.432, C:N.454, C:G.458, C:I.459
- Water bridges: C:D.427, C:D.427
TZD.11: 25 residues within 4Å:- Chain B: N.22, P.23, G.24, E.46, H.69, N.76
- Chain D: E.374, S.375, T.376, S.377, G.400, G.401, L.402, G.426, D.427, G.428, S.429, Y.432, N.454, T.456, Y.457, G.458, I.459, L.460
- Ligands: MG.10
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:Y.432, D:Y.457, D:L.460
- Hydrogen bonds: D:S.375, D:T.376, D:T.376, D:T.376, D:S.377, D:G.400, D:L.402, D:G.426, D:G.428, D:S.429, D:S.429, D:G.458, D:I.459
- Water bridges: D:D.427, D:D.427
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the Ala460Ile mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 4 x TZD: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brodkin, H.R. et al., Crystal Structure of the Ala460Ile mutant of Benzoylformate Decarboxylase from Pseudomonas putida. To be Published
- Release Date
- 2013-05-08
- Peptides
- Benzoylformate decarboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D