SMTL ID : 4kbc.4 (3 other biounits)

CK1d in complex with {4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDIN-2-YL}METHANOL inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x 1QJ: {4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]pyridin-2-yl}methanol(Non-covalent)

1QJ.1: 16 residues within 4Å: Chain A: I.15, S.17, I.23, A.36, I.37, K.38, Y.56, M.80, M.82, E.83, L.84, L.85, G.86, L.135, I.148 Chain B: R.13 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.23, A:A.36, A:M.82, A:L.135 Hydrogen bonds: A:L.85, A:L.85, B:R.13 Water bridges: A:S.17, A:D.149 1QJ.8: 16 residues within 4Å: Chain A: R.13 Chain B: I.15, I.23, A.36, I.37, K.38, Y.56, M.80, M.82, E.83, L.84, L.85, G.86, L.135, I.148, D.149 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.23, B:A.36, B:K.38, B:K.38, B:M.82, B:L.135 Hydrogen bonds: B:L.85, B:G.86 Water bridges: B:S.88, B:D.149

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.157, R.192, K.263 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain A Water bridges: A:H.162, A:R.192, A:R.192, A:D.261 Salt bridges: A:R.157, A:R.192, A:K.263 SO4.3: 4 residues within 4Å: Chain A: Y.167, R.193, R.259, F.260 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.260 Water bridges: A:R.193, A:R.193, A:R.259, A:R.259, A:R.259 Salt bridges: A:R.193 SO4.4: 4 residues within 4Å: Chain A: R.127, K.154, K.171, E.189 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.154 Salt bridges: A:R.127, A:K.154, A:K.171 SO4.5: 5 residues within 4Å: Chain A: S.121, R.157, H.162, K.263 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.157, A:H.162, A:K.263 SO4.6: 2 residues within 4Å: Chain A: Q.271, R.274 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Q.271, A:R.274, A:R.274, A:Y.284 Salt bridges: A:R.274 SO4.7: 3 residues within 4Å: Chain A: R.178, Q.214, G.215 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.215 Salt bridges: A:R.178 SO4.9: 4 residues within 4Å: Chain B: R.178, Q.214, G.215, K.224 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.215 Water bridges: B:R.178, B:L.216, B:L.216, B:K.224, B:K.224 Salt bridges: B:R.178, B:K.224 SO4.10: 4 residues within 4Å: Chain B: R.127, K.154, K.171, E.189 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.127, B:K.154, B:K.171

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 6 residues within 4Å: Chain B: Y.167, I.188, R.193, L.258, R.259, F.260 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.193, B:R.193, B:F.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mente, S. et al., Ligand-protein interactions of selective casein kinase 1 delta inhibitors. J.Med.Chem. (2013)

Release Date

2013-09-18

Peptides

Casein kinase I isoform delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Casein kinase I isoform delta

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