SMTL ID : 4kbz.1

Crystal Structure of Hypoxia-Inducible Factor Prolyl Hydroxylase (PHD2) with (S)-{2-[2-(5-Cyano-3-hydroxy-pyridin-2-yl)-thiazol-4-yl]-acetylamino}-phenyl-acetic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x 1QA: (2S)-({[2-(5-cyano-3-hydroxypyridin-2-yl)-1,3-thiazol-4-yl]acetyl}amino)(phenyl)ethanoic acid(Non-covalent)

1QA.1: 20 residues within 4Å: Chain A: V.60, S.61, R.71, W.77, M.118, Y.122, Y.129, H.132, D.134, R.141, I.146, Y.148, L.162, H.193, V.195, R.202, T.206, W.208, K.227 Ligands: FE2.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.60, A:W.77, A:I.146, A:V.195, A:W.208, A:K.227 Hydrogen bonds: A:R.141, A:R.141, A:Y.148, A:R.202, A:T.206 Water bridges: A:Y.122, A:R.202, A:T.206 Salt bridges: A:K.227

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 4 residues within 4Å: Chain A: H.132, D.134, H.193 Ligands: 1QA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.132, A:D.134, A:H.193, H2O.1

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.215, R.230 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.215, A:R.230 SO4.4: 1 residues within 4Å: Chain A: H.24 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.24 SO4.5: 2 residues within 4Å: Chain A: E.176, R.181 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.181, A:R.181 Salt bridges: A:R.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2013-05-15

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1