- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AKM: [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 16 residues within 4Å:- Chain A: L.115, M.119, S.158, I.160, K.161, L.186, V.187, S.188, M.234, T.239, F.400, M.401, Q.402, W.430
- Chain B: Y.382
- Ligands: AKM.1
9 PLIP interactions:8 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:M.234, A:T.239, B:Y.382
- Hydrogen bonds: A:S.158, A:I.160, A:S.188, A:Q.402
- Water bridges: A:K.161, A:Q.402
FMN.4: 16 residues within 4Å:- Chain A: Y.382
- Chain B: L.115, M.119, S.158, I.160, K.161, L.186, V.187, S.188, M.234, T.239, F.400, M.401, Q.402, W.430
- Ligands: AKM.3
9 PLIP interactions:1 interactions with chain A, 8 interactions with chain B- Hydrophobic interactions: A:Y.382, B:M.234, B:T.239
- Hydrogen bonds: B:S.158, B:I.160, B:S.188, B:Q.402
- Water bridges: B:K.161, B:Q.402
FMN.6: 16 residues within 4Å:- Chain C: L.115, M.119, S.158, I.160, K.161, L.186, V.187, S.188, M.234, T.239, F.400, M.401, Q.402, W.430
- Chain D: Y.382
- Ligands: AKM.5
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:M.234, C:T.239, D:Y.382
- Hydrogen bonds: C:S.158, C:I.160, C:S.188, C:Q.402
- Water bridges: C:K.161, C:Q.402
FMN.8: 16 residues within 4Å:- Chain C: Y.382
- Chain D: L.115, M.119, S.158, I.160, K.161, L.186, V.187, S.188, M.234, T.239, F.400, M.401, Q.402, W.430
- Ligands: AKM.7
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:M.234, D:T.239, C:Y.382
- Hydrogen bonds: D:S.158, D:I.160, D:S.188, D:Q.402
- Water bridges: D:K.161, D:Q.402
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Active site architecture of a sugar N-oxygenase. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- FAD-dependent oxidoreductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x AKM: [(2R,4S,6R)-4-azanyl-4,6-dimethyl-5,5-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)
- 4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Active site architecture of a sugar N-oxygenase. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- FAD-dependent oxidoreductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A