SMTL ID : 4kcx.1

BRDT in complex with Dinaciclib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 1QK: 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium(Non-covalent)

1QK.1: 12 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.46, C.85, N.89, D.94, I.95, M.98 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.30, A:P.31, A:F.32, A:V.36, A:L.41, A:D.94, A:I.95, A:I.95 Hydrogen bonds: A:N.89 1QK.3: 11 residues within 4Å: Chain B: W.30, P.31, F.32, V.36, L.41, L.43, C.85, N.89, D.94, I.95, M.98 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.30, B:F.32, B:V.36, B:L.41, B:D.94, B:I.95, B:I.95 Hydrogen bonds: B:N.89

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: Y.86, L.87, N.89 Chain B: Y.86, L.87, N.89 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, M.P. et al., Cyclin-dependent kinase inhibitor dinaciclib interacts with the acetyl-lysine recognition site of bromodomains. Acs Chem.Biol. (2013)

Release Date

2013-09-18

Peptides

Bromodomain testis-specific protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bromodomain testis-specific protein

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