SMTL ID : 4kd7.1 (1 other biounit)

Human dihydrofolate reductase complexed with NADPH and 5-{3-[3-methoxy-5(pyridine-4-yl)phenyl]prop-1-yn-1-yl}-6-ethyl-pyrimidine-2,4-diamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 30 residues within 4Å: Chain A: V.8, A.9, I.16, G.17, K.18, G.20, D.21, L.22, W.24, G.53, K.54, K.55, T.56, S.59, L.75, S.76, R.77, E.78, R.91, S.92, V.115, G.116, G.117, S.118, S.119, V.120, Y.121, E.123, T.146 Ligands: 9DR.2 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.56 Hydrogen bonds: A:A.9, A:I.16, A:K.18, A:G.20, A:G.53, A:G.53, A:K.54, A:K.55, A:T.56, A:S.59, A:S.59, A:S.76, A:R.77, A:R.77, A:E.78, A:G.117, A:S.118, A:E.123, A:T.146 Water bridges: A:R.77, A:S.118, A:S.118, A:T.146 Salt bridges: A:K.54

1 x 9DR: 6-ethyl-5-{3-[3-methoxy-5-(pyridin-4-yl)phenyl]prop-1-yn-1-yl}pyrimidine-2,4-diamine(Non-covalent)

9DR.2: 17 residues within 4Å: Chain A: I.7, V.8, A.9, D.21, E.30, F.31, F.34, Q.35, T.56, S.59, I.60, P.61, L.67, V.115, Y.121, T.136 Ligands: NDP.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.34, A:F.34, A:F.34, A:T.56, A:I.60, A:I.60, A:L.67 Hydrogen bonds: A:I.7, A:Y.121, A:T.136, A:T.136 Salt bridges: A:E.30 pi-Stacking: A:F.31

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: R.77, R.91 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.77, A:R.91 SO4.4: 4 residues within 4Å: Chain A: R.28, F.31, Q.35, K.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.35 Salt bridges: A:R.28, A:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamb, K.M. et al., Elucidating features that drive the design of selective antifolates using crystal structures of human dihydrofolate reductase. Biochemistry (2013)

Release Date

2013-10-09

Peptides

Dihydrofolate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydrofolate reductase

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