SMTL ID : 4kdq.1

Crystal structure of the hemagglutinin of A/Xinjiang/1/2006 virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.24 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.24 NAG.2: 5 residues within 4Å: Chain A: N.166, N.237, D.238, A.239 Chain B: S.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.166, A:N.237 NAG.3: 1 residues within 4Å: Chain B: N.24 No protein-ligand interaction detected (PLIP) NAG.4: 5 residues within 4Å: Chain B: N.166, N.237, D.238, A.239 Chain C: S.218 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.166, B:N.237 NAG.5: 1 residues within 4Å: Chain C: N.24 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.24 NAG.6: 4 residues within 4Å: Chain A: S.218 Chain C: N.166, N.237, D.238 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.166, C:N.237 NAG.7: 1 residues within 4Å: Chain C: N.155 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, X. et al., Structure and receptor-binding properties of an airborne transmissible avian influenza A virus hemagglutinin H5 (VN1203mut). Protein Cell (2013)

Release Date

2013-07-24

Peptides

Hemagglutinin: ABC
Hemagglutinin: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
B

E
D

F
F

Hemagglutinin

Hemagglutinin