SMTL ID : 4kdt.1 (1 other biounit)

Structure of an early native-like intermediate of beta2-microglobulin amyloidosis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.106, I.107, V.108, G.112, D.113, G.114 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.108, A:D.113, A:D.113, A:D.113, A:G.114 SO4.2: 4 residues within 4Å: Chain A: Y.59, K.65, K.110 Chain B: K.95 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.65, A:K.110, B:K.95 SO4.3: 5 residues within 4Å: Chain A: A.24, S.25, G.26, Y.27, S.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.26, A:Y.27 SO4.4: 3 residues within 4Å: Chain A: R.31 Chain B: R.46, R.82 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.46 Salt bridges: B:R.82, A:R.31

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain B: Y.27, S.53, L.55, Y.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.53, B:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vanderhaegen, S. et al., Structure of an early native-like intermediate of beta 2-microglobulin amyloidogenesis. Protein Sci. (2013)

Release Date

2013-08-28

Peptides

Nanobody24: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Nanobody24

Beta-2-microglobulin

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