SMTL ID : 4kfs.2 (1 other biounit)

Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.192, N.194 Ligands: FLC.3 No protein-ligand interaction detected (PLIP) MG.2: 3 residues within 4Å: Chain A: N.126, Q.150 Ligands: FLC.4 No protein-ligand interaction detected (PLIP)

2 x FLC: CITRATE ANION(Non-covalent)

FLC.3: 4 residues within 4Å: Chain A: N.2, D.192, N.194 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.194 Water bridges: A:N.2, A:N.2, A:D.5, A:D.152, A:N.194 FLC.4: 7 residues within 4Å: Chain A: H.124, A.125, N.126, R.127, H.128, Q.150 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.126, A:R.127, A:H.128 Water bridges: A:L.123, A:H.124, A:N.126, A:R.127, A:R.127, A:Q.150, A:Q.150, A:Q.150, A:Q.150 Salt bridges: A:R.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Happonen, L.J. et al., The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2. J.Virol. (2013)

Release Date

2013-05-22

Peptides

Genome packaging NTPase B204: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Genome packaging NTPase B204

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