SMTL ID : 4kfz.3 (3 other biounits)

Crystal structure of LMO2 and anti-LMO2 VH complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-6-6-mer

Ligands

24 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.22, A:C.25, A:H.43, A:C.46 ZN.2: 6 residues within 4Å: Chain A: C.49, C.52, C.54, C.72, D.75 Chain B: S.108 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.49, A:C.52, A:C.72, A:D.75 ZN.3: 4 residues within 4Å: Chain A: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.86, A:C.89, A:H.108, A:C.111 ZN.4: 5 residues within 4Å: Chain A: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.114, A:C.117, A:C.136, A:D.139 ZN.5: 4 residues within 4Å: Chain C: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.22, C:C.25, C:H.43, C:C.46 ZN.6: 6 residues within 4Å: Chain C: C.49, C.52, C.54, C.72, D.75 Chain D: S.108 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.49, C:C.52, C:C.72, C:D.75 ZN.7: 4 residues within 4Å: Chain C: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.86, C:C.89, C:H.108, C:C.111 ZN.8: 5 residues within 4Å: Chain C: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.114, C:C.117, C:C.136, C:D.139 ZN.9: 4 residues within 4Å: Chain E: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.22, E:C.25, E:H.43, E:C.46 ZN.10: 6 residues within 4Å: Chain E: C.49, C.52, C.54, C.72, D.75 Chain F: S.108 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.49, E:C.52, E:C.72, E:D.75 ZN.11: 4 residues within 4Å: Chain E: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.86, E:C.89, E:H.108, E:C.111 ZN.12: 5 residues within 4Å: Chain E: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.114, E:C.117, E:C.136, E:D.139 ZN.13: 4 residues within 4Å: Chain G: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.22, G:C.25, G:H.43, G:C.46 ZN.14: 6 residues within 4Å: Chain G: C.49, C.52, C.54, C.72, D.75 Chain H: S.108 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.49, G:C.52, G:C.72, G:D.75 ZN.15: 4 residues within 4Å: Chain G: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.86, G:C.89, G:H.108, G:C.111 ZN.16: 5 residues within 4Å: Chain G: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.114, G:C.117, G:C.136, G:D.139 ZN.17: 4 residues within 4Å: Chain I: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.22, I:C.25, I:H.43, I:C.46 ZN.18: 6 residues within 4Å: Chain I: C.49, C.52, C.54, C.72, D.75 Chain J: S.108 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.49, I:C.52, I:C.72, I:D.75 ZN.19: 4 residues within 4Å: Chain I: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.86, I:C.89, I:H.108, I:C.111 ZN.20: 5 residues within 4Å: Chain I: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.114, I:C.117, I:C.136, I:D.139 ZN.21: 4 residues within 4Å: Chain K: C.22, C.25, H.43, C.46 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.22, K:C.25, K:H.43, K:C.46 ZN.22: 6 residues within 4Å: Chain K: C.49, C.52, C.54, C.72, D.75 Chain L: S.108 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.49, K:C.52, K:C.72, K:D.75 ZN.23: 4 residues within 4Å: Chain K: C.86, C.89, H.108, C.111 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.86, K:C.89, K:H.108, K:C.111 ZN.24: 5 residues within 4Å: Chain K: C.114, C.117, C.136, Q.138, D.139 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.114, K:C.117, K:C.136, K:D.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sewell, H. et al., Conformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex. Sci Rep (2014)

Release Date

2014-01-22

Peptides

LMO-2: ACEGIK
Anti-LMO2 VH: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
C

D
C

F
C

H
C

J
C

L
C

LMO-2

Anti-LMO2 VH

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