SMTL ID : 4khm.1 (1 other biounit)

HCV NS5B GT1A with GSK5852

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 1PV: [4-({[5-cyclopropyl-2-(4-fluorophenyl)-3-(methylcarbamoyl)-1-benzofuran-6-yl](methylsulfonyl)amino}methyl)-2-fluorophenyl]boronic acid(Non-covalent)

1PV.1: 17 residues within 4Å: Chain A: F.194, P.198, R.201, L.205, L.315, C.317, D.320, V.322, L.361, I.364, S.366, C.367, S.369, L.385, M.415, F.416, Y.449 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.194, A:F.194, A:L.205, A:L.205, A:V.322, A:Y.449 Hydrogen bonds: A:R.201, A:R.201, A:S.366, A:S.366, A:Y.449

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.502, R.506, V.531, R.532, T.533 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.502, A:R.532, A:T.533, A:T.533 Salt bridges: A:R.506 SO4.3: 5 residues within 4Å: Chain A: R.49, K.52, T.222, R.223, C.224 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.224 Water bridges: A:F.225 Salt bridges: A:R.49, A:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maynard, A. et al., Discovery of a Potent Boronic Acid Derived Inhibitor of the HCV RNA-Dependent RNA Polymerase. J.Med.Chem. (2014)

Release Date

2013-05-15

Peptides

HCV Polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HCV Polymerase

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