- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.43 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 2 x PPY: 3-PHENYLPYRUVIC ACID(Non-covalent)
PPY.2: 11 residues within 4Å:- Chain A: W.119, R.147, M.260, H.263, D.292, A.293, F.307, F.311, H.315
- Ligands: SAM.1, FE.3
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:M.260, A:A.293, A:F.307, A:F.311
- Water bridges: A:R.147, A:R.147
- Salt bridges: A:R.147, A:H.315
PPY.14: 12 residues within 4Å:- Chain B: W.119, R.147, I.152, M.260, H.263, D.292, A.293, F.307, F.311, H.315
- Ligands: SAM.13, FE.15
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:M.260, B:A.293, B:F.307, B:F.311
- Hydrogen bonds: B:W.119
- Salt bridges: B:R.147, B:H.315
- 2 x FE: FE (III) ION(Non-covalent)
FE.3: 4 residues within 4Å:- Chain A: H.263, D.264, H.315
- Ligands: PPY.2
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.263, A:H.315, H2O.1, H2O.1
FE.15: 4 residues within 4Å:- Chain B: H.263, D.264, H.315
- Ligands: PPY.14
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.263, B:H.315, H2O.6, H2O.6
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
HF2.4: 7 residues within 4Å:- Chain A: D.329, F.332, C.339, V.340, K.341, K.342, F.354
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:K.342
- Hydrogen bonds: A:D.329
- Salt bridges: A:K.342
HF2.16: 6 residues within 4Å:- Chain B: D.329, F.332, C.339, V.340, K.342, F.354
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.329, B:D.329
- Salt bridges: B:K.342
- 13 x CA: CALCIUM ION(Non-covalent)
CA.5: 2 residues within 4Å:- Chain A: R.31, R.32
No protein-ligand interaction detected (PLIP)CA.6: 2 residues within 4Å:- Chain A: R.95
- Chain B: R.302
No protein-ligand interaction detected (PLIP)CA.7: 5 residues within 4Å:- Chain A: E.126, Q.146, R.147, D.148
- Chain B: R.129
No protein-ligand interaction detected (PLIP)CA.8: 5 residues within 4Å:- Chain A: R.129
- Chain B: E.126, Q.146, R.147, D.148
No protein-ligand interaction detected (PLIP)CA.9: 3 residues within 4Å:- Chain A: D.237, T.240, V.244
No protein-ligand interaction detected (PLIP)CA.10: 2 residues within 4Å:- Chain A: R.129, Q.133
No protein-ligand interaction detected (PLIP)CA.11: 3 residues within 4Å:- Chain A: K.143, F.144, Y.145
No protein-ligand interaction detected (PLIP)CA.17: 1 residues within 4Å:- Chain B: R.95
No protein-ligand interaction detected (PLIP)CA.18: 1 residues within 4Å:- Chain B: R.32
No protein-ligand interaction detected (PLIP)CA.19: 3 residues within 4Å:- Chain B: K.64, L.65, D.66
No protein-ligand interaction detected (PLIP)CA.20: 2 residues within 4Å:- Chain A: Q.122
- Chain B: Q.133
No protein-ligand interaction detected (PLIP)CA.21: 5 residues within 4Å:- Chain B: G.236, D.237, T.240, Q.243, V.244
No protein-ligand interaction detected (PLIP)CA.22: 5 residues within 4Å:- Chain B: T.240, I.241, D.242, Q.243, K.277
No protein-ligand interaction detected (PLIP)- 1 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-05-07
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.43 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 2 x PPY: 3-PHENYLPYRUVIC ACID(Non-covalent)
- 2 x FE: FE (III) ION(Non-covalent)
- 2 x HF2: (2R)-2-hydroxy-3-phenylpropanoic acid(Covalent)
- 13 x CA: CALCIUM ION(Non-covalent)
- 1 x IOD: IODIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zou, X.W. et al., Structure and mechanism of a nonhaem-iron SAM-dependent C-methyltransferase and its engineering to a hydratase and an O-methyltransferase. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-05-07
- Peptides
- Methyltransferase MppJ: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B