SMTL ID : 4kie.1

Crystal structure of the EAL domain of c-di-GMP specific phosphodiesterase YahA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 7 residues within 4Å: Chain A: Y.177, L.180, P.184, V.185, L.214, K.217, L.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.217 PGE.2: 11 residues within 4Å: Chain A: V.35, T.44, G.45, C.46, E.47, H.102, V.136, E.138, K.189, F.243, Q.245 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.44, A:E.47, A:K.189, A:Q.245 Water bridges: A:C.46 PGE.3: 7 residues within 4Å: Chain A: V.48, V.50, I.66, T.79, L.82, I.105, N.106 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.48, A:N.106, A:N.106 Water bridges: A:V.50 PGE.4: 1 residues within 4Å: Chain A: R.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.152, A:R.152 PGE.5: 7 residues within 4Å: Chain A: H.12, V.14, W.52, H.54, P.55, T.57, I.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.12, A:H.12, A:P.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundriyal, A. et al., Inherent Regulation of EAL Domain-catalyzed Hydrolysis of Second Messenger Cyclic di-GMP. J.Biol.Chem. (2014)

Release Date

2014-01-29

Peptides

Cyclic di-GMP phosphodiesterase YahA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclic di-GMP phosphodiesterase YahA