SMTL ID : 4kk7.1

Structure of EccB1 from the type VII (ESX-1) secretion system of Mycobacterium tuberculosis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: S.109, H.298 Ligands: TRS.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.109, A:H.298, H2O.13 NI.2: 1 residues within 4Å: Chain A: D.111 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.111, H2O.14 NI.3: 2 residues within 4Å: Chain A: Q.23, H.25 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.25 NI.4: 2 residues within 4Å: Chain A: Q.114, H.116 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.116

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 6 residues within 4Å: Chain A: D.107, S.109, H.298, P.303, M.306 Ligands: NI.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.107

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: S.75, S.77, R.282, S.283, A.284, P.366, Q.367, N.368 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.75, A:R.282, A:P.366, A:Q.367, A:N.368, A:N.368 Water bridges: A:R.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, J.M. et al., Structures of EccB1 and EccD1 from the core complex of the mycobacterial ESX-1 type VII secretion system. Bmc Struct.Biol. (2016)

Release Date

2013-06-19

Peptides

ESX-1 secretion system protein eccB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ESX-1 secretion system protein eccB1