- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CNC: CYANOCOBALAMIN(Non-covalent)
CNC.8: 30 residues within 4Å:- Chain A: G.93, E.94, T.142, N.143, Y.145, Q.146, F.179, D.186, T.187, N.240, F.242, S.243, Q.289, W.382, G.383, P.384, Y.385, I.386, N.396, Y.401, W.402, E.403, L.404, P.410, L.411, S.412, Q.413, G.414, Y.433
- Ligands: PEG.19
43 PLIP interactions:42 interactions with chain A, 1 Ligand-Ligand interactions- Hydrophobic interactions: A:E.94, A:N.143, A:Y.145, A:F.179, A:D.186, A:F.242, A:W.382, A:W.382, A:W.382, A:Y.385, A:Y.385, A:Y.385, A:Y.401, A:L.404
- Hydrogen bonds: A:E.94, A:T.142, A:N.143, A:Q.146, A:N.240, A:N.240, A:Q.289, A:Q.289, A:W.382, A:I.386, A:I.386, A:N.396, A:L.404, A:L.411, A:L.411, A:G.414
- Water bridges: A:S.91, A:E.246, A:N.283, A:N.283, A:Q.289, A:R.380, A:R.380, A:R.380, A:R.380, A:S.381, A:W.402, A:S.417
- Metal complexes: CNC.8
- 1 x CA: CALCIUM ION(Non-covalent)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.10: 5 residues within 4Å:- Chain A: T.196, K.200, I.203, V.253
- Ligands: PEG.11
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.200
PEG.11: 2 residues within 4Å:- Chain A: K.200
- Ligands: PEG.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.200
PEG.12: 7 residues within 4Å:- Chain A: K.62, L.63, V.64, G.65, V.104, K.297, D.301
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.64, A:V.104
PEG.13: 5 residues within 4Å:- Chain A: Y.33, L.40, V.64, G.65, I.66
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.33, A:G.65
PEG.14: 5 residues within 4Å:- Chain A: C.155, L.156, N.158, C.197, Q.206
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.158
PEG.15: 3 residues within 4Å:- Chain A: I.219, K.222, E.226
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.222, A:E.226
PEG.16: 5 residues within 4Å:- Chain A: F.242, Q.278, G.279, A.280, Q.413
No protein-ligand interaction detected (PLIP)PEG.17: 9 residues within 4Å:- Chain A: N.49, G.51, T.52, P.284, E.379, R.380, S.381, W.382, G.383
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.49, A:G.51
PEG.18: 3 residues within 4Å:- Chain A: N.395, N.397, D.398
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.395, A:N.397
- Water bridges: A:N.395
PEG.19: 5 residues within 4Å:- Chain A: N.240, P.410, L.411, S.412
- Ligands: CNC.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.240, A:S.412
PEG.20: 5 residues within 4Å:- Chain A: S.53, V.55, N.82, E.94, L.97
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.53, A:N.56
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furger, E. et al., Structural basis for universal corrinoid recognition by the cobalamin transport protein haptocorrin. J.Biol.Chem. (2013)
- Release Date
- 2013-07-17
- Peptides
- Transcobalamin-1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CNC: CYANOCOBALAMIN(Non-covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 11 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Furger, E. et al., Structural basis for universal corrinoid recognition by the cobalamin transport protein haptocorrin. J.Biol.Chem. (2013)
- Release Date
- 2013-07-17
- Peptides
- Transcobalamin-1: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A