SMTL ID : 4kla.1

E343D variant of human ferrochelatase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

3 x CHD: CHOLIC ACID(Non-covalent)

CHD.1: 8 residues within 4Å: Chain A: M.35, R.51, K.54, S.204, V.241, M.244, W.246 Ligands: CHD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:M.35, A:V.241, A:W.246 Hydrogen bonds: A:S.204 Water bridges: A:V.241, A:G.242 Salt bridges: A:R.51 CHD.2: 9 residues within 4Å: Chain A: M.12, L.25, L.28, L.34, K.54, I.55, H.199, V.241 Ligands: CHD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.25, A:L.28, A:L.34, A:I.55, A:V.241 Salt bridges: A:K.54 CHD.5: 8 residues within 4Å: Chain B: L.34, M.35, R.50, R.51, P.202, V.241, M.244 Ligands: PP9.6 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.202 Water bridges: B:V.241, B:M.244 Salt bridges: B:R.50, B:R.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: P.213, Q.214, S.217, W.237, L.247 Chain B: P.213, S.217, W.237 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.217, B:S.217, A:S.217, A:W.237 Water bridges: B:W.237, B:W.237

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.4: 5 residues within 4Å: Chain A: C.132, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.132, A:C.339, A:C.342, A:C.347 FES.7: 6 residues within 4Å: Chain B: C.132, R.208, S.338, C.339, C.342, C.347 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.132, B:C.339, B:C.342, B:C.347

1 x PP9: PROTOPORPHYRIN IX(Non-covalent)

PP9.6: 19 residues within 4Å: Chain B: F.24, L.28, L.34, R.51, I.55, Y.59, Y.127, S.133, T.134, H.199, L.201, P.202, V.205, Y.212, A.272, H.277, I.278, D.279 Ligands: CHD.5 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.28, B:L.34, B:Y.127, B:T.134, B:H.199, B:V.205, B:Y.212, B:A.272, B:I.278 Hydrogen bonds: B:Y.59 Salt bridges: B:R.51 pi-Stacking: B:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lanzilotta, W.N. et al., E343D variant of human ferrochelatase. To be Published

Release Date

2014-05-07

Peptides

Ferrochelatase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ferrochelatase, mitochondrial