SMTL ID : 4kmf.1

Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x DT- DC- DG- DC- DG- DC- DG: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3')(Non-covalent)

DT-DC-DG-DC-DG-DC-DG.1: 15 residues within 4Å: Chain A: K.33, S.34, N.37, R.38, Y.41, K.55, P.56, P.57 Ligands: MN.2, DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3 Protein-ligand interaction information (PLIP) not available DT-DC-DG-DC-DG-DC-DG.3: 15 residues within 4Å: Chain B: K.33, S.34, N.37, R.38, Y.41, K.55, P.56, P.57 Ligands: DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1, MN.4 Protein-ligand interaction information (PLIP) not available

2 x MN: MANGANESE (II) ION(Non-functional Binders)

MN.2: 2 residues within 4Å: Ligands: DT-DC-DG-DC-DG-DC-DG.1, DT-DC-DG-DC-DG-DC-DG.1 No protein-ligand interaction detected (PLIP) MN.4: 2 residues within 4Å: Ligands: DT-DC-DG-DC-DG-DC-DG.3, DT-DC-DG-DC-DG-DC-DG.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D. et al., Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ). Nucleic Acids Res. (2014)

Release Date

2013-07-03

Peptides

Interferon-inducible and double-stranded-dependent eIF-2kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Interferon-inducible and double-stranded-dependent eIF-2kinase