SMTL ID : 4kna.1

Crystal structure of an N-succinylglutamate 5-semialdehyde dehydrogenase from Burkholderia thailandensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.428, R.429 Chain B: R.142, M.475 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: R.140, R.142, M.475 Chain B: R.428, R.429 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: T.408, A.409, F.410, R.432, G.455 Ligands: CA.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.410 Water bridges: A:R.432, A:R.432 EDO.3: 6 residues within 4Å: Chain A: R.290, L.339, A.342, E.383, H.385, F.386 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.290, A:E.383, A:H.385, A:F.386 Water bridges: A:R.345 EDO.6: 6 residues within 4Å: Chain B: R.290, A.342, E.383, E.384, H.385, F.386 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.290, B:E.383, B:E.383, B:H.385, B:Q.391 EDO.7: 6 residues within 4Å: Chain B: T.408, A.409, F.410, R.432, G.455 Ligands: CA.8 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.432

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 2 residues within 4Å: Chain A: T.408 Ligands: EDO.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.408, H2O.14, H2O.14 CA.8: 2 residues within 4Å: Chain B: T.408 Ligands: EDO.7 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.408, H2O.19, H2O.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of an N-succinylglutamate 5-semialdehyde dehydrogenase from Burkholderia thailandensis. TO BE PUBLISHED

Release Date

2013-06-05

Peptides

N-succinylglutamate 5-semialdehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-succinylglutamate 5-semialdehyde dehydrogenase