SMTL ID : 4kng.1

Crystal structure of human LGR5-RSPO1-RNF43

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: R.154, S.157, N.179 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.154 Hydrogen bonds: A:S.157 Water bridges: A:N.179, A:N.179 NAG.3: 4 residues within 4Å: Chain B: R.154, S.155, S.157, N.179 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.154 Hydrogen bonds: B:S.157

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.170, H.194 Chain B: H.170, H.194 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.170, B:H.194, A:H.170, A:H.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P.H. et al., The structural basis of R-spondin recognition by LGR5 and RNF43. Genes Dev. (2013)

Release Date

2013-06-19

Peptides

Leucine-rich repeat-containing G-protein coupled receptor 5: AB
R-spondin-1: CD
E3 ubiquitin-protein ligase RNF43: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
M

D
P

E
E

F
F

Leucine-rich repeat-containing G-protein coupled receptor 5

R-spondin-1

E3 ubiquitin-protein ligase RNF43