SMTL ID : 4kop.1

Crystal Structure of WHY2 from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

6 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.1: 6 residues within 4Å: Chain A: K.69, F.70, A.71, H.93, P.95, K.107 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.69, A:A.71 Salt bridges: A:H.93, A:K.107 MPO.2: 5 residues within 4Å: Chain B: H.114, D.116, S.118, F.121, P.140 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:H.114 MPO.3: 7 residues within 4Å: Chain B: K.69, F.70, A.71, H.93, D.94, P.95, K.107 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.71 Salt bridges: B:H.93, B:K.107 MPO.4: 4 residues within 4Å: Chain C: F.18, R.60, K.61, Y.62 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.62 Salt bridges: C:K.61 pi-Cation interactions: C:F.18 MPO.5: 5 residues within 4Å: Chain D: K.69, F.70, A.71, H.93, K.107 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.69, D:A.71 Salt bridges: D:H.93, D:K.107 MPO.6: 5 residues within 4Å: Chain D: K.21, K.112, F.121, S.123, V.138 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:K.112 Salt bridges: D:K.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cappadocia, L. et al., A family portrait: structural comparison of the Whirly proteins from Arabidopsis thaliana and Solanum tuberosum. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-11-13

Peptides

Single-stranded DNA-binding protein WHY2, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Single-stranded DNA-binding protein WHY2, mitochondrial