SMTL ID : 4koq.1

Crystal Structure of WHY3 from Arabidopsis thaliana

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: V.67, F.68, S.69, H.91, P.93, K.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.69 Salt bridges: A:H.91, A:K.105 PO4.2: 8 residues within 4Å: Chain A: K.17, G.18, A.54, G.56, V.57, R.58, Q.59, Y.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.58, A:Q.59, A:Y.60 Water bridges: A:K.17 PO4.3: 6 residues within 4Å: Chain B: V.67, F.68, S.69, H.91, P.93, K.105 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.69 Salt bridges: B:H.91, B:K.105 PO4.4: 8 residues within 4Å: Chain B: K.17, G.18, A.54, G.56, V.57, R.58, Q.59, Y.60 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.58, B:Q.59, B:Y.60 Water bridges: B:K.17 PO4.5: 6 residues within 4Å: Chain C: V.67, F.68, S.69, H.91, P.93, K.105 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.69 Salt bridges: C:H.91, C:K.105 PO4.6: 8 residues within 4Å: Chain C: K.17, G.18, A.54, G.56, V.57, R.58, Q.59, Y.60 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.58, C:Q.59, C:Y.60 Water bridges: C:K.17 PO4.7: 6 residues within 4Å: Chain D: V.67, F.68, S.69, H.91, P.93, K.105 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.69 Salt bridges: D:H.91, D:K.105 PO4.8: 8 residues within 4Å: Chain D: K.17, G.18, A.54, G.56, V.57, R.58, Q.59, Y.60 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:R.58, D:Q.59, D:Y.60 Water bridges: D:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cappadocia, L. et al., A family portrait: structural comparison of the Whirly proteins from Arabidopsis thaliana and Solanum tuberosum. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-11-13

Peptides

Single-stranded DNA-binding protein WHY3, chloroplastic: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Single-stranded DNA-binding protein WHY3, chloroplastic