SMTL ID : 4kp7.1

Structure of Plasmodium IspC in complex with a beta-thia-isostere derivative of Fosmidomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x MN3: MANGANESE (III) ION(Non-covalent)

MN3.1: 6 residues within 4Å: Chain A: K.144, D.170, S.171, E.172, E.254 Ligands: 1UQ.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.170, A:E.172, A:E.172, A:E.254 MN3.4: 5 residues within 4Å: Chain B: K.144, D.170, E.172, E.254 Ligands: 1UQ.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.170, B:E.172, B:E.254

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 27 residues within 4Å: Chain A: G.23, S.24, T.25, G.26, S.27, I.28, Y.52, V.53, N.54, K.55, S.56, H.75, G.119, I.120, D.121, Q.124, A.142, N.143, K.144, E.145, D.170, W.235, M.237, G.238, I.241, M.299 Ligands: 1UQ.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:I.28 Hydrogen bonds: A:G.23, A:T.25, A:T.25, A:G.26, A:S.27, A:S.27, A:S.27, A:I.28, A:N.54, A:K.55, A:S.56, A:S.56, A:H.75, A:D.121, A:D.121, A:Q.124, A:N.143, A:K.144, A:G.238

2 x 1UQ: [(S)-({2-[hydroxy(methyl)amino]-2-oxoethyl}sulfanyl)(phenyl)methyl]phosphonic acid(Non-covalent)

1UQ.3: 18 residues within 4Å: Chain A: K.144, D.170, S.171, E.172, S.208, S.209, K.234, W.235, M.237, I.241, S.245, N.250, K.251, E.254, C.277, M.299 Ligands: MN3.1, NAP.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.234, A:W.235 Hydrogen bonds: A:K.144, A:S.171, A:S.209, A:S.209, A:S.245, A:N.250, A:K.251 Water bridges: A:S.208, A:S.208, A:G.210, A:G.210 1UQ.5: 13 residues within 4Å: Chain B: K.144, D.170, S.171, E.172, S.208, S.209, M.237, S.245, N.250, K.251, E.254, C.277 Ligands: MN3.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.144, B:S.171, B:S.209, B:S.209, B:G.210, B:G.211, B:S.245, B:N.250, B:K.251 Water bridges: B:S.208, B:K.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kunfermann, A. et al., IspC as Target for Antiinfective Drug Discovery: Synthesis, Enantiomeric Separation, and Structural Biology of Fosmidomycin Thia Isosters. J.Med.Chem. (2013)

Release Date

2013-10-02

Peptides

1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast