- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-trimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.7: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.8, MG.18, MG.19, MG.29, MG.30
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
MG.8: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.7, MG.18, MG.19, MG.29, MG.30
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
MG.18: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.7, MG.8, MG.19, MG.29, MG.30
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
MG.19: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.7, MG.8, MG.18, MG.29, MG.30
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
MG.29: 8 residues within 4Å:- Chain A: D.406
- Chain B: D.406
- Chain C: D.406
- Ligands: MG.7, MG.8, MG.18, MG.19, MG.30
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
MG.30: 11 residues within 4Å:- Chain A: D.406, Q.408
- Chain B: D.406, Q.408
- Chain C: D.406, Q.408
- Ligands: MG.7, MG.8, MG.18, MG.19, MG.29
6 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: B:D.406, A:D.406, C:D.406, H2O.1, H2O.24, H2O.48
- 6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.9: 8 residues within 4Å:- Chain A: F.402, T.420, G.422, A.423
- Chain C: N.386, Y.387, D.388, V.410
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:A.423, C:D.388
- Water bridges: A:T.439, A:T.439, A:T.439
PG4.10: 6 residues within 4Å:- Chain A: N.189, N.190, N.191, A.192, Q.193, G.194
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.189
PG4.20: 8 residues within 4Å:- Chain A: N.386, Y.387, D.388, V.410
- Chain B: F.402, T.420, G.422, A.423
5 PLIP interactions:1 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:D.388, B:A.423
- Water bridges: B:T.439, B:T.439, B:T.439
PG4.21: 6 residues within 4Å:- Chain B: N.189, N.190, N.191, A.192, Q.193, G.194
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.189
PG4.31: 8 residues within 4Å:- Chain B: N.386, Y.387, D.388, V.410
- Chain C: F.402, T.420, G.422, A.423
5 PLIP interactions:1 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:D.388, C:A.423
- Water bridges: C:T.439, C:T.439, C:T.439
PG4.32: 6 residues within 4Å:- Chain C: N.189, N.190, N.191, A.192, Q.193, G.194
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.189
- 3 x 1SE: N-{4-[(4-hydroxy-3-nitrobenzoyl)amino]phenyl}pyridine-2-carboxamide(Non-covalent)
1SE.11: 17 residues within 4Å:- Chain A: L.11, A.12, A.13, G.14, V.26, T.82, Y.103, G.104, D.105, V.131, Y.139, V.168, N.169, T.170, V.223, E.224, G.225
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:L.11, A:T.82, A:Y.103, A:Y.103, A:V.131, A:V.168, A:V.223
- Hydrogen bonds: A:A.13, A:G.14, A:D.105, A:T.170, A:G.225
- Water bridges: A:A.12, A:K.25, A:K.25
- pi-Stacking: A:Y.139
1SE.22: 17 residues within 4Å:- Chain B: L.11, A.12, A.13, G.14, V.26, T.82, Y.103, G.104, D.105, V.131, Y.139, V.168, N.169, T.170, V.223, E.224, G.225
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:L.11, B:T.82, B:Y.103, B:Y.103, B:V.131, B:V.168, B:V.223
- Hydrogen bonds: B:A.13, B:G.14, B:D.105, B:T.170, B:G.225
- Water bridges: B:A.12, B:K.25, B:K.25
- pi-Stacking: B:Y.139
1SE.33: 17 residues within 4Å:- Chain C: L.11, A.12, A.13, G.14, V.26, T.82, Y.103, G.104, D.105, V.131, Y.139, V.168, N.169, T.170, V.223, E.224, G.225
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:L.11, C:T.82, C:Y.103, C:Y.103, C:V.131, C:V.168, C:V.223
- Hydrogen bonds: C:A.13, C:G.14, C:D.105, C:T.170, C:G.225
- Water bridges: C:A.12, C:K.25, C:K.25
- pi-Stacking: C:Y.139
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doig, P. et al., Rational design of inhibitors of the bacterial cell wall synthetic enzyme GlmU using virtual screening and lead-hopping. Bioorg.Med.Chem. (2014)
- Release Date
- 2014-10-15
- Peptides
- Bifunctional protein GlmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.21 Å
- Oligo State
- homo-trimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 3 x 1SE: N-{4-[(4-hydroxy-3-nitrobenzoyl)amino]phenyl}pyridine-2-carboxamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Doig, P. et al., Rational design of inhibitors of the bacterial cell wall synthetic enzyme GlmU using virtual screening and lead-hopping. Bioorg.Med.Chem. (2014)
- Release Date
- 2014-10-15
- Peptides
- Bifunctional protein GlmU: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A