SMTL ID : 4kq0.1

Crystal structure of double-helical CGG-repetitive RNA 19mer complexed with RSS p19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.6, F.48, R.50 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.6, A:S.6 Water bridges: A:K.49, A:R.50, A:R.50 Salt bridges: A:R.50 SO4.2: 2 residues within 4Å: Chain A: S.16, T.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.16 Water bridges: A:T.18, A:T.18 SO4.3: 9 residues within 4Å: Chain A: K.38, E.39, S.40, S.91, I.92, R.93, S.98 Chain B: G.11, C.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.91, A:S.91, A:R.93, A:S.98 Water bridges: A:S.40 SO4.4: 4 residues within 4Å: Chain C: M.4, S.6, F.48, R.50 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.6 Water bridges: C:K.49, C:R.50, C:R.50 Salt bridges: C:R.50 SO4.5: 2 residues within 4Å: Chain C: S.16, T.18 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.16 Water bridges: C:S.16, C:T.18 SO4.6: 9 residues within 4Å: Chain C: K.38, E.39, S.40, S.91, I.92, R.93, S.98 Chain D: G.11, C.12 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.91, C:R.93, C:S.98, C:S.98 Water bridges: C:S.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamjar, J. et al., Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs). To be Published

Release Date

2014-05-14

Peptides

RNA silencing suppressor p19: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

RNA silencing suppressor p19