SMTL ID : 4kr2.1

Glycyl-tRNA synthetase in complex with tRNA-Gly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain A: R.221, E.223, I.231, R.232, V.233, F.236, E.347, I.348, V.349, S.468, G.470, R.473 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.223, A:V.233, A:V.233, A:S.468, A:S.468, A:G.470, A:R.473, A:R.473 Salt bridges: A:R.221 pi-Stacking: A:F.236, A:F.236 pi-Cation interactions: A:R.473 AMP.2: 12 residues within 4Å: Chain C: R.221, E.223, I.231, R.232, V.233, F.236, E.347, I.348, V.349, S.468, G.470, R.473 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:E.223, C:V.233, C:V.233, C:S.468, C:S.468, C:G.470, C:R.473, C:R.473 Salt bridges: C:R.221 pi-Stacking: C:F.236, C:F.236 pi-Cation interactions: C:R.473

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qin, X. et al., Cocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation. J.Biol.Chem. (2014)

Release Date

2014-05-21

Peptides

Glycine--tRNA ligase: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Glycine--tRNA ligase