SMTL ID : 4krr.1

Crystal structure of Drosophila WntD N-terminal domain-linker (residues 31-240)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.125, R.128, D.164, Q.167 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.128 Water bridges: A:Q.167 GOL.2: 6 residues within 4Å: Chain A: N.43, S.62, M.63, I.66, Y.104, F.108 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.104, A:Y.104 Water bridges: A:N.43, A:M.63, A:Y.104 GOL.3: 6 residues within 4Å: Chain A: E.105, G.109, S.110, G.116, R.119, R.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.105, A:G.109, A:G.116 Water bridges: A:E.105 GOL.4: 4 residues within 4Å: Chain A: Q.30, W.32, Y.169, Y.203 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.31, A:W.32, A:Y.169, A:Y.169 Water bridges: A:S.200

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: D.73, C.74, G.77, V.78, I.79, C.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.79, A:C.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, M.L. et al., Structural Studies of Wnts and Identification of an LRP6 Binding Site. Structure (2013)

Release Date

2013-07-10

Peptides

Wnt inhibitor of Dorsal protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Wnt inhibitor of Dorsal protein