SMTL ID : 4kru.1

X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

monomer

Ligands

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 9 residues within 4Å: Chain A: D.24, Y.77, F.79, D.112, E.114, Y.146, W.166, Q.188, D.203 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.146, A:W.166 Hydrogen bonds: A:Y.77, A:D.112, A:D.112, A:D.112, A:D.112, A:E.114, A:Y.146, A:Q.188 Water bridges: A:S.26 Salt bridges: A:K.48

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.2: 6 residues within 4Å: Chain A: G.71, S.73, D.106, E.209, F.212, I.213 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.73, A:D.106, A:D.106, A:I.213 Water bridges: A:S.73, A:I.213

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: V.5, H.6, H.7, H.8, H.10 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.5, A:H.7, A:H.8 Water bridges: A:H.10 Salt bridges: A:H.7, A:H.8, A:H.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamai, E. et al., X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens. Mol.Microbiol. (2014)

Release Date

2014-04-02

Peptides

Autolytic lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Autolytic lysozyme