SMTL ID : 4ksg.1

Dna gyrase atp binding domain of enterococcus faecalis in complex with a small molecule inhibitor (4-[(1S,5R,6R)-6-AMINO-1-METHYL-3-AZABICYCLO[3.2.0]HEPT-3-YL]-6-FLUORO-N-METHYL-2-[(2-METHYLPYRIMIDIN-5-YL)OXY]-9H-PYRIMIDO[4,5-B]INDOL-8-AMINE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 920: 4-[(1S,5R,6R)-6-amino-1-methyl-3-azabicyclo[3.2.0]hept-3-yl]-6-fluoro-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine(Non-covalent)

920.1: 14 residues within 4Å: Chain A: I.28, N.31, S.32, E.35, V.56, D.58, R.61, G.62, I.63, P.64, F.80, S.105, T.150, V.152 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.28, A:N.31, A:I.63, A:I.63, A:P.64, A:V.152 Hydrogen bonds: A:N.31, A:D.58, A:D.58, A:T.150 Water bridges: A:E.35, A:E.35, A:G.62, A:G.62, A:K.121 pi-Cation interactions: A:R.61

1 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.2: 5 residues within 4Å: Chain A: A.36, L.37, N.183, R.184, L.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., A new class of type iia topoisomerase inhibitors with broad-spectrum antibacterial activity. To be Published

Release Date

2014-01-15

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

Related Entries With Identical Sequence