SMTL ID : 4ksh.1

Dna gyrase atp binding domain of enterococcus faecalis in complex with a small molecule inhibitor (7-({4-[(3R)-3-AMINOPYRROLIDIN-1-YL]-5-CHLORO-6-ETHYL-7H-PYRROLO[2,3-D]PYRIMIDIN-2-YL}SULFANYL)-1,5-NAPHTHYRIDIN-1(4H)-OL)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x HTT: 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro-6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)-1,5-naphthyridin-1(4H)-ol(Non-covalent)

HTT.1: 14 residues within 4Å: Chain A: I.28, N.31, S.32, E.35, D.58, R.61, G.62, I.63, P.64, G.102, S.105, K.121, T.150, V.152 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.28, A:R.61, A:I.63, A:T.150, A:V.152 Hydrogen bonds: A:N.31, A:D.58, A:K.121 Water bridges: A:R.61, A:K.121, A:K.121, A:T.150, A:T.150 pi-Cation interactions: A:R.61, A:R.61 Halogen bonds: A:S.105

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.36, N.183, R.184, L.186 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.41, A:K.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., A new class of type iia topoisomerase inhibitors with broad-spectrum antibacterial activity. To be Published

Release Date

2014-01-15

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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