SMTL ID : 4kth.2 (2 other biounits)

Structure of A/Hubei/1/2010 H5 HA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.169, N.240, D.241, A.242 Chain B: S.221 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: Q.19, N.27 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: R.281, N.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.290 NAG.4: 1 residues within 4Å: Chain A: N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15 NAG.5: 5 residues within 4Å: Chain B: N.169, N.240, D.241, A.242 Chain C: S.221 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.242 Hydrogen bonds: B:N.240 NAG.6: 2 residues within 4Å: Chain B: Q.19, N.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.19 NAG.7: 5 residues within 4Å: Chain A: S.221 Chain C: N.169, N.240, D.241, A.242 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:A.242 Hydrogen bonds: C:N.240, C:N.240 NAG.8: 1 residues within 4Å: Chain C: N.27 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.27 NAG.9: 1 residues within 4Å: Chain C: N.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shore, D.A. et al., Structural and Antigenic Variation among Diverse Clade 2 H5N1 Viruses. Plos One (2013)

Release Date

2013-11-27

Peptides

Hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
C

Hemagglutinin

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