SMTL ID : 4ktn.1

Dna gyrase atp binding domain of enterococcus faecalis in complex with a small molecule inhibitor ((3S)-1-[2-(PYRIDO[2,3-B]PYRAZIN-7-YLSULFANYL)-9H-PYRIMIDO[4,5-B]INDOL-4-YL]PYRROLIDIN-3-AMINE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x MJU: (3S)-1-[2-(pyrido[2,3-b]pyrazin-7-ylsulfanyl)-9H-pyrimido[4,5-b]indol-4-yl]pyrrolidin-3-amine(Non-covalent)

MJU.1: 13 residues within 4Å: Chain A: I.28, N.31, S.32, E.35, D.58, R.61, G.62, I.63, P.64, V.79, S.105, T.150, V.152 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.28, A:N.31, A:R.61, A:I.63, A:I.63, A:V.152 Hydrogen bonds: A:D.58 Water bridges: A:R.61, A:G.62, A:K.121, A:K.121, A:T.150 pi-Cation interactions: A:R.61, A:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., A new class of type iia topoisomerase inhibitors with broad-spectrum antibacterial activity. To be Published

Release Date

2014-01-15

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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