SMTL ID : 4kv8.1

Crystal structure of HIV RT in complex with BILR0355BS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 10 residues within 4Å: Chain B: V.23, W.26, R.80, E.81, K.84, K.397, E.401, E.415, W.416, F.418 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:K.397, B:W.416, B:E.81, B:E.81, B:K.84, B:K.84, B:W.416, B:W.416 Water bridges: B:D.78, B:E.81

1 x MLA: MALONIC ACID(Non-covalent)

MLA.2: 6 residues within 4Å: Chain A: G.437, A.438, E.439, N.461, R.462 Chain B: A.290 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.437, A:G.437, A:N.461 Salt bridges: A:R.462 Hydrophobic interactions: B:A.290

1 x 1WT: 11-ethyl-5-methyl-8-[2-(1-oxidanylquinolin-4-yl)oxyethyl]dipyrido[3,2-[1,4]diazepin-6-one(Non-covalent)

1WT.3: 19 residues within 4Å: Chain A: P.96, L.101, K.102, K.104, K.105, S.106, V.107, V.180, Y.182, Y.189, V.190, G.191, P.226, F.228, W.230, L.235, H.236, P.237, Y.319 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.96, A:L.101, A:V.107, A:V.107, A:Y.182, A:P.226, A:F.228, A:F.228, A:Y.319 Hydrogen bonds: A:V.107 pi-Stacking: A:W.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laplante, S.R. et al., N- versus O-alkylation: Utilizing NMR methods to establish reliable primary structure determinations for drug discovery. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-07-31

Peptides

HIV Reverse transcriptase P66: A
HIV Reverse transcriptase P51: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV Reverse transcriptase P66

HIV Reverse transcriptase P51