SMTL ID : 4kv9.1

GTPase domain of Septin 10 from Schistosoma mansoni in complex with GDP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 15 residues within 4Å: Chain A: G.51, I.52, G.53, K.54, S.55, T.56, K.184, D.186, V.237, G.238, R.253, Y.255 Chain B: T.157, T.187, E.192 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.51, A:I.52, A:G.53, A:K.54, A:S.55, A:S.55, A:T.56, A:T.56, A:K.184, A:G.238, A:R.253, A:R.253, A:Y.255, B:T.187 Water bridges: A:S.55, A:S.55 Salt bridges: A:K.54, A:D.186 GDP.2: 18 residues within 4Å: Chain A: T.157, H.159, T.187, E.192 Chain B: E.49, T.50, G.51, I.52, G.53, K.54, S.55, T.56, K.184, D.186, V.237, G.238, R.253, Y.255 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.49, B:G.51, B:I.52, B:G.53, B:K.54, B:S.55, B:T.56, B:T.56, B:K.184, B:K.184, B:G.238, B:R.253, B:Y.255, A:T.187 Water bridges: B:E.49, B:T.50, B:S.55 Salt bridges: B:K.54, B:D.186, A:H.159, A:H.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zeraik, A.E. et al., Crystal Structure of a Schistosoma mansoni Septin Reveals the Phenomenon of Strand Slippage in Septins Dependent on the Nature of the Bound Nucleotide. J.Biol.Chem. (2014)

Release Date

2014-02-05

Peptides

Septin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Septin

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