SMTL ID : 4kw1.3 (3 other biounits)

Structure of a/egypt/n03072/2010 h5 ha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.168, N.239, D.240, A.241 Chain E: S.220 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: Q.19, D.21, K.26, N.27, N.312 Chain B: E.97 Chain D: K.58 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:K.58 NAG-NAG.6: 5 residues within 4Å: Chain A: S.220 Chain C: N.168, N.239, D.240, A.241 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 7 residues within 4Å: Chain C: Q.19, D.21, K.26, N.27, N.312 Chain D: E.97 Chain F: K.58 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:K.58 NAG-NAG.11: 5 residues within 4Å: Chain C: S.220 Chain E: N.168, N.239, D.240, A.241 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 7 residues within 4Å: Chain B: K.58 Chain E: Q.19, D.21, K.26, N.27, N.312 Chain F: E.97 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.58

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.15 No protein-ligand interaction detected (PLIP) NAG.8: 1 residues within 4Å: Chain C: N.15 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain E: N.15 No protein-ligand interaction detected (PLIP)

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: P.161, T.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.162, A:T.162 PO4.5: 6 residues within 4Å: Chain B: N.95, L.99 Chain F: N.95, M.102 Ligands: PO4.10, PO4.15 No protein-ligand interaction detected (PLIP) PO4.9: 2 residues within 4Å: Chain C: P.161, T.162 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.162, C:T.162 PO4.10: 6 residues within 4Å: Chain B: N.95, M.102 Chain D: N.95, L.99 Ligands: PO4.5, PO4.15 No protein-ligand interaction detected (PLIP) PO4.14: 2 residues within 4Å: Chain E: P.161, T.162 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.162, E:T.162 PO4.15: 6 residues within 4Å: Chain D: N.95, M.102 Chain F: N.95, L.99 Ligands: PO4.5, PO4.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shore, D.A. et al., Structural and antigenic variation among diverse clade 2 H5N1 viruses. Plos One (2013)

Release Date

2014-06-25

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
E

E
E

B
F

D
F

F
F

Hemagglutinin

Hemagglutinin

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