SMTL ID : 4kw5.2 (1 other biounit)

M. tuberculosis DprE1 in complex with inhibitor TCA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: W.16, I.52, A.53, R.54, G.55, L.56, G.57, R.58, S.59, Y.60, N.63, A.64, M.74, A.94, P.116, G.117, T.118, V.121, T.122, G.124, G.125, A.128, C.129, I.131, H.132, N.178, G.179, G.182, I.183, I.184, Y.415, A.417 Ligands: 1W6.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.16, A:R.58, A:Y.60 Hydrogen bonds: A:A.53, A:G.55, A:L.56, A:G.57, A:R.58, A:S.59, A:N.63, A:G.117, A:T.122, A:G.125, A:H.132, A:H.132, A:I.184, A:I.184 Water bridges: A:G.124, A:G.124 pi-Cation interactions: A:K.418

1 x 1W6: ethyl ({2-[(1,3-benzothiazol-2-ylcarbonyl)amino]thiophen-3-yl}carbonyl)carbamate(Non-covalent)

1W6.2: 13 residues within 4Å: Chain A: Y.60, H.132, G.133, K.134, S.228, W.230, Y.314, P.316, Q.336, N.385, C.387, K.418 Ligands: FAD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.230 Hydrogen bonds: A:S.228, A:K.418 Water bridges: A:K.134, A:Y.314

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: M.102, A.105, L.106, L.110, W.111, V.112, L.115, M.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.105, A:A.105, A:V.112 GOL.4: 10 residues within 4Å: Chain A: H.137, H.216, E.221, S.227, S.228, A.229, V.245, F.366, K.367, L.368 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.221, A:F.366, A:L.368, A:L.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Identification of a small molecule with activity against drug-resistant and persistent tuberculosis. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-07-10

Peptides

Oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Oxidoreductase

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