SMTL ID : 4kwm.1 (2 other biounits)

Structure of a/anhui/5/2005 h5 ha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.169, N.240, A.242 Chain E: S.221 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain B: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.154, B:T.156 NAG.3: 4 residues within 4Å: Chain A: S.221 Chain C: N.169, N.240, A.242 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain D: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.154, D:T.156 NAG.5: 4 residues within 4Å: Chain C: S.221 Chain E: N.169, N.240, A.242 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain F: E.150, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.154, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shore, D.A. et al., Structural and antigenic variation among diverse clade 2 H5N1 viruses. Plos One (2013)

Release Date

2014-06-25

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin

Hemagglutinin

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