SMTL ID : 4kxk.1

Alanine-glyoxylate aminotransferase variant K390A/K391A in complex with the TPR domain of human Pex5p

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.83, G.84, H.85, Q.210 Chain B: Y.262, H.264, T.265 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.83, A:G.84, A:H.85, A:Q.210, B:Y.262, B:T.265, B:T.265, B:T.265 Salt bridges: A:H.85 SO4.3: 7 residues within 4Å: Chain A: Y.262, H.264, T.265 Chain B: S.83, G.84, H.85, Q.210 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.83, B:G.84, B:H.85, B:Q.210, A:Y.262, A:T.265, A:T.265 Salt bridges: B:H.85

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 7 residues within 4Å: Chain A: P.30, G.31, W.110, S.160, K.211, L.353, R.362 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.160, A:K.211, A:R.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fodor, K. et al., Ligand-Induced Compaction of the PEX5 Receptor-Binding Cavity Impacts Protein Import Efficiency into Peroxisomes. Traffic (2015)

Release Date

2014-11-19

Peptides

Serine--pyruvate aminotransferase: AB
Peroxisomal targeting signal 1 receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Serine--pyruvate aminotransferase

Peroxisomal targeting signal 1 receptor

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