SMTL ID : 4kyd.3 (2 other biounits)

Partial Structure of the C-terminal domain of the HPIV4B phosphoprotein, fused to MBP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 16 residues within 4Å: Chain A: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, F.156, W.230, M.330, W.340, R.344 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.62, A:R.66, A:R.66, A:E.153, A:Y.155, A:R.344 GLC-GLC.2: 15 residues within 4Å: Chain B: N.12, D.14, K.15, W.62, A.63, D.65, R.66, E.111, E.153, P.154, Y.155, W.230, M.330, W.340, R.344 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.62, B:R.66, B:R.66, B:E.153, B:Y.155, B:R.344

6 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.3: 2 residues within 4Å: Chain A: P.133, N.201 No protein-ligand interaction detected (PLIP) MPO.4: 6 residues within 4Å: Chain A: N.150, Q.152, E.153, D.209, Y.210, I.348 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.152, A:D.209 Hydrogen bonds: A:N.150, A:Y.210 Water bridges: A:S.211 MPO.5: 4 residues within 4Å: Chain A: Y.90, P.91, F.92, D.95 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.91 Hydrogen bonds: A:F.92 Salt bridges: A:D.95 MPO.6: 7 residues within 4Å: Chain A: A.163, D.164, G.165, N.185, A.186, G.187, Q.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.185, A:G.187 MPO.7: 7 residues within 4Å: Chain B: G.13, D.14, N.150, Q.152, E.153, D.209, Y.210 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.150, B:Y.210 MPO.8: 4 residues within 4Å: Chain B: E.214, A.215, N.218, N.234 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.218, B:N.234

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yegambaram, K. et al., Protein domain definition should allow for conditional disorder. Protein Sci. (2013)

Release Date

2013-09-25

Peptides

Maltose-binding periplasmic protein, Phosphoprotein, chimeric construct: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltose-binding periplasmic protein, Phosphoprotein, chimeric construct

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