SMTL ID : 4kyr.1

Structure of a product bound plant phosphatase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x GLC- GLC- GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-functional Binders)

GLC-GLC-GLC-GLC-GLC-GLC.1: 13 residues within 4Å: Chain A: S.7, Y.9, E.10, Y.11, Y.61, W.62, D.87, F.88, S.120, L.123, C.155, G.156 Ligands: PO4.5 No protein-ligand interaction detected (PLIP) GLC-GLC-GLC-GLC-GLC-GLC.2: 10 residues within 4Å: Chain A: R.79, H.80, M.81, R.82, R.83, S.103, W.106, R.206, G.207, T.208 No protein-ligand interaction detected (PLIP)

2 x GLC- GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose

GLC-GLC-GLC-GLC-GLC.3: 15 residues within 4Å: Chain A: K.171, E.177, L.182, N.185, A.186, F.187, D.189, I.190, A.191, E.194 Ligands: GLC-GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC-GLC.4, GLC-GLC-GLC-GLC-GLC.4 No protein-ligand interaction detected (PLIP) GLC-GLC-GLC-GLC-GLC.4: 8 residues within 4Å: Chain A: N.141, N.185, E.188 Ligands: GLC-GLC-GLC-GLC-GLC.3, GLC-GLC-GLC-GLC-GLC.3, GLC-GLC-GLC-GLC-GLC.3, GLC-GLC-GLC-GLC-GLC.3, GLC-GLC-GLC-GLC-GLC.3 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 10 residues within 4Å: Chain A: D.87, S.119, S.120, A.121, G.122, L.123, G.124, R.125 Ligands: GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.119, A:S.120, A:A.121, A:G.122, A:L.123, A:G.124, A:R.125 Water bridges: A:D.87, A:R.125 Salt bridges: A:R.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meekins, D.A. et al., Structure of the Arabidopsis Glucan Phosphatase LIKE SEX FOUR2 Reveals a Unique Mechanism for Starch Dephosphorylation. Plant Cell (2013)

Release Date

2013-07-24

Peptides

Phosphoglucan phosphatase LSF2, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoglucan phosphatase LSF2, chloroplastic