SMTL ID : 4l02.1 (2 other biounits)

Crystal Structure of SphK1 with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x 1V2: (2R,4S)-1-[2-(4-{[4-(3,4-dichlorophenyl)-1,3-thiazol-2-yl]amino}phenyl)ethyl]-2-(hydroxymethyl)piperidin-4-ol(Non-covalent)

1V2.1: 23 residues within 4Å: Chain A: D.101, L.187, S.188, A.190, F.193, I.194, V.197, D.198, F.212, T.216, L.279, L.281, L.288, M.292, F.308, L.319, L.322, F.323, M.326, H.331, L.339, A.359, G.362 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.187, A:I.194, A:I.194, A:V.197, A:F.212, A:F.212, A:L.279, A:L.322, A:F.323 Hydrogen bonds: A:D.101, A:D.101, A:S.188, A:T.216 Water bridges: A:A.190 Salt bridges: A:D.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustin, D.J. et al., Structure guided design of a series of sphingosine kinase (SphK) inhibitors. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-07-24

Peptides

Sphingosine kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sphingosine kinase 1

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