SMTL ID : 4l2h.1

Structure of a catalytically inactive PARG in complex with a poly-ADP-ribose fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.1: 12 residues within 4Å: Chain A: R.184, N.260, G.266, G.269, N.270, G.271, L.272, V.273, Q.276, S.317, A.390 Ligands: AR6.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.260, A:N.270, A:N.270, A:G.271, A:L.272, A:Q.276, A:S.317, A:S.317 Water bridges: A:R.184, A:R.184, A:R.184, A:R.184, A:G.266, A:G.266 AR6.2: 22 residues within 4Å: Chain A: L.246, I.247, E.248, F.258, A.259, N.260, G.265, V.273, Q.274, E.275, Q.276, Y.313, Y.316, K.385, G.387, C.388, G.389, A.390, F.391, C.416, F.418 Ligands: AR6.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:I.247, A:E.248, A:N.260, A:N.260, A:Q.274, A:E.275, A:Q.276, A:Y.313, A:Y.316, A:G.387, A:G.389, A:A.390, A:F.391 Water bridges: A:G.266, A:Q.274, A:E.275, A:K.385 pi-Stacking: A:F.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barkauskaite, E. et al., Visualization of poly(ADP-ribose) bound to PARG reveals inherent balance between exo- and endo-glycohydrolase activities. Nat Commun (2013)

Release Date

2013-07-24

Peptides

Poly(ADP-ribose) glycohydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly(ADP-ribose) glycohydrolase