SMTL ID : 4l39.1 (1 other biounit)

Crystal structure of GH3.12 from Arabidopsis thaliana in complex with AMPCPP and salicylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.335, V.402 Ligands: APC.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.402

1 x SAL: 2-HYDROXYBENZOIC ACID(Non-covalent)

SAL.2: 6 residues within 4Å: Chain A: L.122, Y.126, R.129, I.223, T.330, G.332 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.223 Hydrogen bonds: A:Y.126, A:R.129 Salt bridges: A:R.129

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.3: 14 residues within 4Å: Chain A: S.101, F.224, V.305, T.307, T.330, Y.331, G.332, S.333, S.334, Y.353, D.404, F.420, K.434 Ligands: MG.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.101, A:S.334, A:S.334, A:Y.353, A:D.404 pi-Stacking: A:F.224, A:Y.331, A:Y.331

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Round, A. et al., Determination of the GH3.12 protein conformation through HPLC-integrated SAXS measurements combined with X-ray crystallography. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-10-02

Peptides

4-substituted benzoates-glutamate ligase GH3.12: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-substituted benzoates-glutamate ligase GH3.12

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