SMTL ID : 4l5l.1

Crystal structure of 26 kDa GST of Clonorchis sinensis in P212121 symmetry

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 11 residues within 4Å: Chain A: Y.7, W.8, L.13, W.41, K.45, N.54, L.55, P.56, Q.67, S.68 Chain B: D.101 12 PLIP interactions: 1 interactions with chain B, 11 interactions with chain A Hydrogen bonds: B:D.101, A:W.41, A:N.54, A:L.55, A:L.55, A:L.55, A:Q.67, A:Q.67, A:S.68 Hydrophobic interactions: A:L.13 Water bridges: A:L.69 Salt bridges: A:K.45 GSH.4: 11 residues within 4Å: Chain A: D.101 Chain B: Y.7, W.8, L.13, W.41, K.45, N.54, L.55, P.56, Q.67, S.68 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.13 Hydrogen bonds: B:W.41, B:N.54, B:L.55, B:L.55, B:L.55, B:Q.67, B:Q.67, B:S.68, A:D.101 Water bridges: B:L.69 Salt bridges: B:K.45

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: V.24, D.26, H.79 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.26, A:D.26, A:H.79 ZN.5: 3 residues within 4Å: Chain B: V.24, D.26, H.79 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.26, B:D.26, B:H.79

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 5 residues within 4Å: Chain A: Y.23, V.24, L.186, P.187, N.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.188 MES.6: 5 residues within 4Å: Chain B: Y.23, V.24, L.186, P.187, N.188 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.188, B:N.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Y.H. et al., Crystal structures of 26kDa Clonorchis sinensis glutathione S-transferase reveal zinc binding and putative metal binding. Biochem.Biophys.Res.Commun. (2013)

Release Date

2013-09-04

Peptides

Putative glutathione transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative glutathione transferase

Related Entries With Identical Sequence