SMTL ID : 4l5n.1 (5 other biounits)

Crystallographic Structure of HHV-1 Uracil-DNA Glycosylase complexed with the Bacillus phage PZA inhibitor protein p56

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

hetero-1-2-mer

Ligands

9 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Q.84, D.85, A.155 Chain B: D.34, V.37, L.38, N.41 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.38, B:N.41 Hydrophobic interactions: A:A.155 Water bridges: A:D.85 ACT.2: 5 residues within 4Å: Chain A: P.197, R.198, V.199, H.200, Y.228 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.228 Hydrogen bonds: A:Y.228 ACT.3: 5 residues within 4Å: Chain A: K.213 Chain C: Y.39, G.40, T.42, I.46 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Salt bridges: A:K.213 Hydrophobic interactions: C:T.42, C:I.46 ACT.4: 5 residues within 4Å: Chain A: I.170, R.171, A.174, I.193, P.195 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.171 Water bridges: A:R.171, A:R.194, A:D.196, A:H.200 ACT.5: 5 residues within 4Å: Chain A: V.22, F.23, L.46, Y.49, N.50 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.22 Hydrogen bonds: A:N.50 ACT.6: 2 residues within 4Å: Chain A: P.13, A.43 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.13, A:A.43 ACT.7: 6 residues within 4Å: Chain A: Y.121, A.124, I.237, D.238, W.239, S.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.239, A:S.240 ACT.8: 5 residues within 4Å: Chain B: D.52, K.53 Chain C: I.47, K.48 Ligands: ACT.9 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.48 Salt bridges: C:K.48 ACT.9: 4 residues within 4Å: Chain C: L.14, Q.22, I.47 Ligands: ACT.8 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.47 Hydrogen bonds: C:Q.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cole, A.R. et al., Architecturally diverse proteins converge on an analogous mechanism to inactivate Uracil-DNA glycosylase. Nucleic Acids Res. (2013)

Release Date

2013-08-07

Peptides

Uracil-DNA glycosylase: A
Early protein GP1B: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

Uracil-DNA glycosylase

Early protein GP1B

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