SMTL ID : 4l7e.1

Three dimensional structure of mutant D78A of human HD domain-containing protein 2, Genomics Consortium (NESG) Target HR6723

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.32, H.49, H.77, D.143 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: R.32, H.49, H.77, D.143 Ligand excluded by PLIP

8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: Q.141, G.173, K.174, N.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.176 Water bridges: A:Q.141 PEG.3: 4 residues within 4Å: Chain A: Q.131, S.132, A.134, K.137 No protein-ligand interaction detected (PLIP) PEG.4: 5 residues within 4Å: Chain A: N.39, Q.41, E.158, K.160, R.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.41, A:K.160 PEG.5: 5 residues within 4Å: Chain A: V.30, C.82, I.83, V.84, G.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.29 PEG.8: 4 residues within 4Å: Chain B: N.39, E.158, K.160, R.163 No protein-ligand interaction detected (PLIP) PEG.9: 6 residues within 4Å: Chain B: Q.26, R.29, V.30, C.82, I.83, G.85 No protein-ligand interaction detected (PLIP) PEG.11: 3 residues within 4Å: Chain B: G.173, K.174, N.176 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.173, B:N.176 Water bridges: B:Q.141 PEG.12: 4 residues within 4Å: Chain B: V.36, N.39, V.40, P.43 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.36

2 x UNL: UNKNOWN LIGAND

UNL.6: 7 residues within 4Å: Chain A: R.32, T.33, G.34, W.35, D.86, M.147, F.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.33, A:G.34, A:W.35, A:D.86 UNL.10: 7 residues within 4Å: Chain B: R.32, T.33, G.34, W.35, D.86, M.147, F.167 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.32, B:T.33, B:G.34, B:W.35, B:D.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A. et al., Northeast Structural Genomics Consortium Target HR6723. To be Published

Release Date

2013-07-24

Peptides

HD domain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HD domain-containing protein 2